Atmospheric Measurement Techniques Atmos. Meas. Tech. 1867-8548 2014 7 4 M. Riederer A. Serafimovich https://orcid.org/0000-0002-3065-6073 T. Foken https://orcid.org/0000-0003-4562-9083

04 25 2014 1057 1064 https://creativecommons.org/licenses/by/3.0/ 10.5194/amtd-6-8783-2013 10.5194/amt-7-1057-2014 https://amt.copernicus.org/articles/7/1057/2014/ https://amt.copernicus.org/articles/7/1057/2014/amt-7-1057-2014.pdf 10.1007/978-94-007-2351-1 Aubinet, M., Vesala, T., and Papale, D.: Eddy Covariance, Springer, Dordrecht, Heidelberg, London, New York, 2012. 10.1046/j.1365-2486.2003.00629.x Baldocchi, D. D.: Assessing the eddy covariance technique for evaluating carbon dioxide exchange rates of ecosystems: past, present and future, Global Change Biol., 9, 479–492, https://doi.org/10.1046/j.1365-2486.2003.00629.x, 2003. 10.1007/BF00707033 Collineau, S. and Brunet, Y.: Detection of turbulent coherent motions in a forest canopy part I: Wavelet analysis, Bound.-Lay. Meteorol., 65, 357–379, 1993. 10.1046/j.1365-2389.1998.4940701.x Conen, F. and Smith, K. A.: A re-examination of closed flux chamber methods for the measurement of trace gas emissions from soils to the atmosphere, Eur. J. Soil Sci., 49, 701–707, https://doi.org/10.1046/j.1365-2389.1998.4940701.x, 1998. 10.1016/S0168-1923(02)00100-4 Davidson, E. A., Savage, K., Verchot, L. V., and Navarro, R.: Minimizing artefacts and biases in chamber-based measurements of soil respiration: FLUXNET 2000 Synthesis, Agr. Forest Meteorol., 113, 21–37, https://doi.org/10.1016/S0168-1923(02)00100-4, 2002. 10.1007/s11104-008-9599-z Denmead, O. T.: Approaches to measuring fluxes of methane and nitrous oxide between landscapes and the atmosphere, Plant Soil, 309, 5–24, https://doi.org/10.1007/s11104-008-9599-z, 2008. Denmead, O. T. and Reicosky, D.: Tillage-induced gas fluxes: comparison of meteorological and large chamber techniques, In: Proceedings of the International Soil Tillage Research Organization 2003 conference, Brisbane, Australia, 13–18 July, 2003. 10.1007/BF02166801 Desjardins, R. L.: Description and evaluation of a sensible heat flux detector, Bound.-Lay. Meteorol., 11, 147–154, https://doi.org/10.1007/BF02166801, 1977. 10.1046/j.1365-2486.2003.00561.x Dore, S., Hymus, G. J., Johnson, D. P., Hinkle, C. R., Valentini, R., and Drake, B. G.: Cross validation of open–top chamber and eddy covariance measurements of ecosystem CO2 exchange in a Florida scrub-oak ecosystem, Global Change Biol., 9, 84–95, https://doi.org/10.1046/j.1365-2486.2003.00561.x, 2003. Foken, T.: Micrometeorology, Springer, Berlin, 2008. 10.1016/0168-1923(95)02248-1 Foken, T. and Wichura, B.: Tools for quality assessment of surface based flux measurements, Agr. Forest Meteorol., 78, 83–105, 1996. 10.1007/1-4020-2265-4_9 Foken, T., Göckede, M., Mauder, M., Mahrt, L., Amiro, B. D., and Munger, J. W.: Post-field data quality control, in: Handbook of micrometeorology: A guide for surface flux measurement and analysis, edited by: Lee, X., Massman, W., and Law B., Kluwer, Dordrecht, 181–208, 2004. 10.1007/978-94-007-2351-1_1 Foken, T., Aubinet, M., and Leuning, R.: The eddy-covariance method, in: Eddy Covariance: A Practical Guide to Measurement and Data Analysis, edited by: Aubinet, M., Vesala, T., and Papale, D., Springer, Dordrecht, Heidelberg, London, New York, 1–19, 2012a. 10.1007/978-94-007-2351-1_4 Foken, T., Leuning, R., Oncley, S. P., Mauder, M., and Aubinet, M.: Corrections and data quality, in: Eddy Covariance: A Practical Guide to Measurement and Data Analysis, edited by: Aubinet, M., Vesala, T., and Papale, D., Springer, Dordrecht, Heidelberg, London, New York, 85–131, 2012b. 10.5194/acp-12-1923-2012 Foken, T., Meixner, F. X., Falge, E., Zetzsch, C., Serafimovich, A., Bargsten, A., Behrendt, T., Biermann, T., Breuninger, C., Dix, S., Gerken, T., Hunner, M., Lehmann-Pape, L., Hens, K., Jocher, G., Kesselmeier, J., Lüers, J., Mayer, J.-C., Moravek, A., Plake, D., Riederer, M., Rütz, F., Scheibe, M., Siebicke, L., Sörgel, M., Staudt, K., Trebs, I., Tsokankunku, A., Welling, M., Wolff, V., and Zhu, Z.: Coupling processes and exchange of energy and reactive and non-reactive trace gases at a forest site – results of the EGER experiment, Atmos. Chem. Phys., 12, 1923–1950, https://doi.org/10.5194/acp-12-1923-2012, 2012c. 10.1029/2007GB003027 Fox, A. M., Huntley, B., Lloyd, C. R., Williams, M., and Baxter, R.: Net ecosystem exchange over heterogeneous Arctic tundra: Scaling between chamber and eddy covariance measurements, Global Biogeochem. Cy., 22, GB2027, https://doi.org/10.1029/2007GB003027, 2008. 10.1007/978-94-009-0975-5_22 Gao, W., Shaw, R. H., and Paw U, K. T.: Observation of organized structure in turbulent flow within and above a forest canopy, Bound.-Lay. Meteorol., 47, 349–377, https://doi.org/10.1007/BF00122339, 1989. 10.1016/j.agrformet.2004.07.012 Göckede, M., Rebmann, C., and Foken, T.: A combination of quality assessment tools for eddy covariance measurements with footprint modelling for the characterisation of complex sites: Flux and concentration footprints, Agr. Forest Meteorol., 127, 175–188, https://doi.org/10.1016/j.agrformet.2004.07.012, 2004. 10.1007/s10546-005-6435-3 Göckede, M., Markkanen, T., Hasager, C. B., and Foken, T.: Update of a footprint-based approach for the characterization of complex measurement sites, Bound.-Lay. Meteorol., 118, 635–655, https://doi.org/10.1007/s10546-005-6435-3, 2006. 10.1111/j.1365-2486.1996.tb00070.x Goulden, M. L., Munger, J. W., Fan, S.-M., Daube, B. C., and Wofsy, S.: Measurements of carbon sequestration by long–term eddy covariance: methods and a critical evaluation of accuracy, Glob. Change Biol., 2, 169–182, https://doi.org/10.1111/j.1365-2486.1996.tb00070.x, 1996. 10.1017/CBO9780511919701 Holmes, P., Lumley, J. L., Berkooz, G., and Rowley, C. W.: Turbulence, coherent structures, dynamical systems and symmetry, 2nd Edn., Cambridge University Press, Cambridge, UK, New York, 386 pp., 2012. 10.1016/S0168-1923(00)00177-5 Janssens, I. A., Kowalski, A. S., and Ceulemans, R.: Forest floor CO2 fluxes estimated by eddy covariance and chamber–based model, Agr. Forest Meteorol., 106, 61–69, 2001. 10.1029/2007JD009149 Karipot, A., Leclerc, M. Y., Zhang, G., Lewin, K. F., Nagy, J., Hendrey, G. R., and Starr, D.: Influence of nocturnal low-level jet on turbulence structure and CO2 flux measurements over a forest canopy, J. Geophys. Res., 113, D10102, https://doi.org/10.1029/2007JD009149, 2008. 10.2136/sssaj1971.03615995003500010013x Kimball, B. and Lemon, E. R.: Air Turbulence Effects upon Soil Gas Exchange, Soil Sci. Soc. Am. J., 35, 16–21, 1971. 10.1016/0002-1571(71)90020-3 Kimball, B. and Lemon, E. R.: Theory of soil air movement due to pressure fluctuations, Agric. Meteorol., 9, 163–181, 1972. 10.5194/bg-4-1005-2007 Kutzbach, L., Schneider, J., Sachs, T., Giebels, M., Nykänen, H., Shurpali, N. J., Martikainen, P. J., Alm, J., and Wilmking, M.: CO2 flux determination by closed-chamber methods can be seriously biased by inappropriate application of linear regression, Biogeosciences, 4, 1005–1025, https://doi.org/10.5194/bg-4-1005-2007, 2007. 10.5194/bg-9-3305-2012 Lai, D. Y. F., Roulet, N. T., Humphreys, E. R., Moore, T. R., and Dalva, M.: The effect of atmospheric turbulence and chamber deployment period on autochamber CO2 and CH4 flux measurements in an ombrotrophic peatland, Biogeosciences, 9, 3305–3322, https://doi.org/10.5194/bg-9-3305-2012, 2012. 10.1016/j.agrformet.2006.05.005 Laine, A., Sottocornola, M., Kiely, G., Byrne, K. A., Wilson, D., and Tuittila, E.-S.: Estimating net ecosystem exchange in a patterned ecosystem: Example from blanket bog, Agr. Forest Meteorol., 138, 231–243, https://doi.org/10.1016/j.agrformet.2006.05.005, 2006. 10.1007/1-4020-2265-4 Lee, X., Massman, W. J., and Law, B. (Eds.): Handbook of Micrometeorology: A Guide for Surface Flux Measurement and Analysis, Kluwer, Dordrecht, 250 pp., 2004. LI-COR: LI-8100 Instruction Manual, LI-8100 automated soil CO2 flux system, LI-COR, Inc., Lincoln, NE, USA 68504, 2004. Mauder, M. and Foken, T.: Documentation and instruction manual of the eddy covariance software package TK2, Univ. Bayreuth, Abt. Mikrometeorol., ISSN: 1614-89166, 26, 42 pp., 2004. Mauder, M. and Foken, T.: Documentation and instruction manual of the eddy covariance software package TK3, Univ. Bayreuth, Abt. Mikrometeorol., ISSN: 1614-89166, 46, 58 pp., 2011. 10.5194/bg-5-451-2008 Mauder, M., Foken, T., Clement, R., Elbers, J. A., Eugster, W., Grünwald, T., Heusinkveld, B., and Kolle, O.: Quality control of CarboEurope flux data – Part 2: Inter-comparison of eddy-covariance software, Biogeosciences, 5, 451–462, https://doi.org/10.5194/bg-5-451-2008, 2008. 10.1093/jxb/48.5.1133 Moncrieff, J., Valentini, R., Greco S., Seufert, G., and Ciccioli P.: Trace gas exchange over terrestrial ecosystems: Methods and perspectives in micrometeorology, J. Exp. Bot., 48, 1133–1142, 1997. 10.1175/1520-0469(1948)005<0265:VEFOHI>2.0.CO;2 Montgomery R. B.: Vertical eddy flux of heat in the atmosphere, J. Meteorol., 5, 265–274, 1948. 10.1016/j.agrformet.2008.06.016 Myklebust, M., Hipps, L., and Ryel, R.: Comparison of eddy covariance, chamber, and gradient methods of measuring soil CO2 efflux in an annual semi-arid grass, Bromus tectorum, Agr. Forest Meteorol., 148, 1894–1907, https://doi.org/10.1016/j.agrformet.2008.06.016, 2008. 10.1029/97JD01440 Norman, J. M., Kucharik, C. J., Gower, S. T., Baldocchi, D. D., Crill, P. M., Rayment, M., Savage, K., and Striegl, R. G.: A comparison of six methods for measuring soil–surface carbon dioxide fluxes, J. Geophys. Res., 102, 28771–28777, 1997. Obukhov, A. M.: Charakteristiki mikrostruktury vetra v prizemnom sloje atmosfery (Characteristics of the micro-structure of the wind in the surface layer of the atmosphere), Izv AN SSSR, ser Geofiz., 3, 49–68, 1951. 10.1016/j.agrformet.2003.12.001 Pumpanen, J., Kolari, P., Ilvesniemi, H., Minkkinen, K., Vesala, T., Niinistö, S., Lohila, A., Larmola, T., Morero, M., Pihlatie, M., Janssens, I., Yuste, J. C., Grünzweig, J. M., Reth, S., Subke, J.-A., Savage, K., Kutsch, W., Østreng, G., Ziegler, W., Anthoni, P., Lindroth, A., and Hari, P.: Comparison of different chamber techniques for measuring soil CO2 efflux, Agr. Forest Meteorol., 123, 159–176, https://doi.org/10.1016/j.agrformet.2003.12.001, 2004. 10.1023/A:1002702810929 Rannik, Ü., Aubinet, M., Kurbanmuradov, O., Sabelfeld, K. K., Markkanen, T., and Vesala, T.: Footprint analysis for measurements over a heterogeneous forest, Bound.-Lay. Meteorol., 97, 137–166, https://doi.org/10.1023/A:1002702810929, 2000. 10.1007/978-94-007-2351-1_8 Rannik, Ü., Sogachev, A., Foken, T., Göckede, M., Kljun, N., Leclerc, M. Y., and Vesala, T.: Footprint Analysis, in: Eddy Covariance: A Practical Guide to Measurement and Data Analysis, edited by: Aubinet, M., Vesala, T., and Papale, D., Springer Netherlands, Dordrecht, 211–261, 2012. 10.1007/s00704-004-0094-z Reth, S., Göckede, M., and Falge, E.: CO2 efflux from agricultural soils in Eastern Germany – comparison of a closed chamber system with eddy covariance measurements, Theor. Appl. Climatol., 80, 105–120, https://doi.org/10.1007/s00704-004-0094-z, 2005. 10.2134/agronmonogr47.c12 Rochette, P. and Hutchinson, G. L.: Measurement of Soil Respiration in situ: Chamber Techniques, in: Micrometeorology in agricultural systems, edited by: Hatfield, J. L. and Baker, J. M., American Society of Agronomy; Crop Science Society of America; Soil Science Society of America, Madison, Wisconsin, 247–287, 2005. 10.1007/s10546-011-9619-z Serafimovich, A., Thomas, C., and Foken, T.: Vertical and Horizontal Transport of Energy and Matter by Coherent Motions in a Tall Spruce Canopy, Bound.-Lay. Meteorol., 140, 429–451, https://doi.org/10.1007/s10546-011-9619-z, 2011. 10.1007/978-94-009-3027-8 Stull, R. B.: An introduction to boundary layer meteorology, Kluwer Academic Publishers, Dordrecht, Boston, xii, 666, 1988. 10.1016/j.agrformet.2004.06.007 Subke, J.-A. and Tenhunen, J. D.: Direct measurements of CO2 flux below a spruce forest canopy, Agr. Forest Meteorol., 126, 157–168, https://doi.org/10.1016/j.agrformet.2004.06.007, 2004. 10.1175/1520-0469(1951)008<0135:TMOVTO>2.0.CO;2 Swinbank W. C.: The measurement of vertical transfer of heat and water vapor by eddies in the lower atmosphere, J. Meteorol., 8, 135–145, 1951. 10.1007/s00704-004-0093-0 Thomas, C. and Foken, T.: Detection of long–term coherent exchange over spruce forest using wavelet analysis, Theor. Appl. Climatol., 80, 91–104, https://doi.org/10.1007/s00704-004-0093-0, 2005. 10.1007/s10546-006-9144-7 Thomas, C. and Foken, T.: Flux contribution of coherent structures and its implications for the exchange of energy and matter in a tall spruce canopy, Bound.-Lay. Meteorol., 123, 317–337, https://doi.org/10.1007/s10546-006-9144-7, 2007. 10.1111/j.1600-0889.2007.00252.x van Gorsel, E., Leuning, R., Cleugh, H. A., Keith, H., and Suni, T.: Nocturnal carbon efflux: reconciliation of eddy covariance and chamber measurements using an alternative to the u* – threshold filtering technique, Tellus B, 59, 397–403, https://doi.org/10.1111/j.1600-0889.2007.00252.x, 2007. 10.1175/1520-0426(1997)014<0512:QCAFSP>2.0.CO;2 Vickers, D. and Mahrt, L.: Quality control and flux sampling problems for tower and aircraft data, J. Atmos. Ocean. Tech., 14, 512–526, 1997. 10.5194/bg-10-6865-2013 Wang, K., Liu, C., Zheng, X., Pihlatie, M., Li, B., Haapanala, S., Vesala, T., Liu, H., Wang, Y., Liu, G., and Hu, F.: Comparison between eddy covariance and automatic chamber techniques for measuring net ecosystem exchange of carbon dioxide in cotton and wheat fields, Biogeosciences, 10, 6865–6877, https://doi.org/10.5194/bg-10-6865-2013, 2013. 10.1093/treephys/tpp098 Wang, M., Guan, D.-X., Han, S.-J., and Wu, J.-L.: Comparison of eddy covariance and chamber-based methods for measuring CO2 flux in a temperate mixed forest, Tree Physiol., 30, 149–163, https://doi.org/10.1093/treephys/tpp098, 2009. 10.1364/AO.40.000846 Werle, P. and Kormann, R.: Fast Chemical Sensor for Eddy-Correlation Measurements of Methane Emissions from Rice Paddy Fields, Appl. Optics, 40, 846–858, https://doi.org/10.1364/AO.40.000846, 2001. 10.1007/978-94-007-2351-1_13 Wohlfahrt, G., Klumpp K., and Soussana, J. F.: Eddy covariance measurements over grasslands, in: Eddy Covariance: A practical guide to measurement and data analysis, edited by: Aubinet, M., Vesala, T., and Papale, D., Springer, Dordrecht, Heidelberg, London, New York, 333–344, 2012. 10.1029/2005JD006435 Xu, L., Furtaw, M. D., Madsen, R. A., Garcia, R. L., Anderson, D. J., and McDermitt, D. K.: On maintaining pressure equilibrium between a soil CO2 flux chamber and the ambient air, J. Geophys. Res., 111, D08S10, https://doi.org/10.1029/2005JD006435, 2006.